PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000130.1_g00030.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 226aa    MW: 23869.7 Da    PI: 5.6377
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000130.1_g00030.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.51.6e-182575155
                      AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             ++ykGVr ++ +g+Wv+eIr p   ++++r++lg++ t+e Aa+a++aa ++l+g
  Itr_sc000130.1_g00030.1 25 KKYKGVRMRS-WGSWVSEIRAP---NQKTRIWLGSYSTPEAAARAYDAALLCLKG 75
                             59*****998.**********9...336*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.4E-112675IPR001471AP2/ERF domain
PROSITE profilePS5103221.6942685IPR001471AP2/ERF domain
SMARTSM003803.0E-302691IPR001471AP2/ERF domain
SuperFamilySSF541713.99E-182685IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.3E-282685IPR001471AP2/ERF domain
PRINTSPR003671.5E-82738IPR001471AP2/ERF domain
CDDcd000181.33E-152985No hitNo description
PRINTSPR003671.5E-84965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MVKTADQHKM ASSPSSGNAA AAMKKKYKGV RMRSWGSWVS EIRAPNQKTR IWLGSYSTPE  60
AAARAYDAAL LCLKGAAAAA NLNFPLDHSY HIPPSGAVLS PKSIQRIAAA AANGGAGAIP  120
LSASPPSGGF ASYSPSSSCS ASSSPLSDTA GIEDEDYFPS IDADIAPAHQ EPAPAAAVAA  180
IMAQCSWYNF ESPKYNDMLM NGAFFDPPLV EDVYEEFGEI RLWNFN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006386376.11e-52AP2 domain-containing transcription factor family protein
TrEMBLA9PLA61e-52A9PLA6_POPTR; AP2 domain-containing transcription factor family protein
STRINGPOPTR_0002s08610.13e-52(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA61772435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21910.12e-20ERF family protein